miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|240318680|gb|GR333201.1|GR333201 GCCCCCGCCGCAGCCGGACCCGACGATGACGACGTCGCACTCGACCCTGCACACGTCCCGCGGGGAGTCATCGGCCACCG
TGAGGCCCTTCTCGGCGAGGTAGGCCGCGAGGGACGCGTCGTTGTGGTGGATGGTCTCCACCACGCCGTCGTCGAGTGGC
CGCTTCGTCGACTTTGGCTGCTCCTCTTCCTTGGAGTCGTCGTTGTCGTCGTCGTCGTCGTCGTCTGTGGGCGGGCTGTA
CCCGATTGCTCGCCAGTGCGGATTCTCCGAGTTCTCGTCGGTCTGCCATGAGTAGAAGACGTAGAGGCAGAAGACCTTGA
CGAGGATGAAGAAGAGGCGGAGCGGCGGGAACAGGGTCTCCCGGCTCCACCGCCGCAGCGCGTCCTCCCGCCGCTCCACG
GGCATCTCCGCGAACCTCCGCACGAACGGGAACCGGGGCGACAGGCACCGCGCGCCGCACAGCGCCAGCGTGCCCAGCCG
CGTGCCCAGCAGCCACAGCACCGTCCGCACCAGCGCCAGAGCCTCCCGGAGGCACATTGCGGACATCAGCTGCGCAACCT
CGTCCGGGACGGGCGGGTCGGCGGCGGAGGCGAGGAAGAAGTCCCGGACGGCCTTGCTGTCCGCCGCCGGGTGGTCGCCG
TCGGGCGGCAGCGACGGGACCAGCGCGCCGCACGCGGCGGTGAGGGACAGCATCTGGGTGGCGGAGAAGCCGTGCGTGTA
GGGCTCCTTCCTCGCGCCTCTCCCCGAAGAGAGGGTGGCC




Most similar to sp|B5WWZ9|FAO2_LOTJA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|B5WWZ9|FAO2_LOTJA Long-chain-alcohol oxidase FAO2 OS=Lotus
           japonicus GN=FAO2 PE=2 SV=1
          Length = 750

 Score =  206 bits (523), Expect = 2e-52
 Identities = 111/250 (44%), Positives = 157/250 (62%), Gaps = 4/250 (1%)
 Frame = -2

Query: 738 GARKEP-YTHGFSATQMLSLTAACGALVPSLPPDG-DHPAADSKAVRDFFLASAADPPVP 565
           G RKE  Y+HG S++QM  + A C AL PS P D  ++ ++  KA+  F+ AS +  P+P
Sbjct: 16  GRRKEKGYSHGLSSSQMHVIAAICEALFPSQPLDSQNNQSSVDKALSAFYTASGSQAPLP 75

Query: 564 DEVAQLMSAM--CLREALALVRTVLWLLGTRLGTLALCGARCLSPRFPFVRRFAEMPVER 391
           DE A+L+        EAL+LV  VL +L  RLGTL LCG  CL  R+PF+ +F+E+P+E+
Sbjct: 76  DEAAELLFKFNRSFPEALSLVSWVLLILSFRLGTLLLCGTLCLDWRWPFIHKFSEIPLEK 135

Query: 390 REDALRRWSRETLFPPLRLFFILVKVFCLYVFYSWQTDENSENPHWRAIGYSPPTXXXXX 211
           RE+ L+RWSRE  + PLRL F+L K+ C Y  +S + D N  NP W+AIGY   T     
Sbjct: 136 REEILKRWSREKCWIPLRLVFVLTKLVCFYNLFS-RADVNGHNPIWKAIGYQVDT----- 189

Query: 210 XXXXDSKEEEQPKSTKRPLDDGVVETIHHNDASLAAYLAEKGLTVADDSPRDVCRVECDV 31
                    E+    KRPL +G++ET++  D++L   L EKGL V +D  +++ +++CD 
Sbjct: 190 --------REKLTQKKRPLQEGLIETMYETDSTLIQSLTEKGLEVTEDLEQNMYKIKCDA 241

Query: 30  VIVGSGCGGG 1
           VIVGSGCGGG
Sbjct: 242 VIVGSGCGGG 251